[INFO] fetching crate microbiorust-py 0.1.6...
[INFO] checking microbiorust-py-0.1.6 against master#4eb62535fc12dd1a63fd43a4173e224e79313c4d for pr-158816
[INFO] extracting crate microbiorust-py 0.1.6 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate microbiorust-py 0.1.6
[INFO] finished tweaking crates.io crate microbiorust-py 0.1.6
[INFO] tweaked toml for crates.io crate microbiorust-py 0.1.6 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate microbiorust-py 0.1.6 on toolchain 4eb62535fc12dd1a63fd43a4173e224e79313c4d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4eb62535fc12dd1a63fd43a4173e224e79313c4d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate microbiorust-py 0.1.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4eb62535fc12dd1a63fd43a4173e224e79313c4d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded pythonize v0.26.0
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.26.0
[INFO] [stderr]   Downloaded pyo3-build-config v0.26.0
[INFO] [stderr]   Downloaded pyo3-macros v0.26.0
[INFO] [stderr]   Downloaded rustpython-parser-core v0.4.0
[INFO] [stderr]   Downloaded is-macro v0.3.7
[INFO] [stderr]   Downloaded unic-emoji-char v0.9.0
[INFO] [stderr]   Downloaded rustpython-parser-vendored v0.4.0
[INFO] [stderr]   Downloaded unicode_names2_generator v1.3.0
[INFO] [stderr]   Downloaded protein-translate v0.2.0
[INFO] [stderr]   Downloaded microBioRust-seqmetrics v0.1.3
[INFO] [stderr]   Downloaded unic-ucd-ident v0.9.0
[INFO] [stderr]   Downloaded pyo3-stub-gen v0.17.2
[INFO] [stderr]   Downloaded microBioRust v0.1.4
[INFO] [stderr]   Downloaded rustpython-ast v0.4.0
[INFO] [stderr]   Downloaded pyo3-ffi v0.26.0
[INFO] [stderr]   Downloaded numpy v0.26.0
[INFO] [stderr]   Downloaded pyo3-stub-gen-derive v0.17.2
[INFO] [stderr]   Downloaded rustpython-parser v0.4.0
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded unicode_names2 v1.3.0
[INFO] [stderr]   Downloaded pyo3 v0.26.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] f17791be54268657b1955fcf574250c74505e36cec4e61b9bcf72c83af481cf6
[INFO] running `Command { std: "docker" "start" "f17791be54268657b1955fcf574250c74505e36cec4e61b9bcf72c83af481cf6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f17791be54268657b1955fcf574250c74505e36cec4e61b9bcf72c83af481cf6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f17791be54268657b1955fcf574250c74505e36cec4e61b9bcf72c83af481cf6" "/opt/rustwide/cargo-home/bin/cargo" "+4eb62535fc12dd1a63fd43a4173e224e79313c4d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f17791be54268657b1955fcf574250c74505e36cec4e61b9bcf72c83af481cf6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f17791be54268657b1955fcf574250c74505e36cec4e61b9bcf72c83af481cf6" "/opt/rustwide/cargo-home/bin/cargo" "+4eb62535fc12dd1a63fd43a4173e224e79313c4d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling target-lexicon v0.13.5
[INFO] [stderr]    Compiling libc v0.2.183
[INFO] [stderr]    Compiling zerocopy v0.8.42
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling unicode-width v0.2.2
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling crunchy v0.2.4
[INFO] [stderr]    Compiling getopts v0.2.24
[INFO] [stderr]    Compiling tiny-keccak v2.0.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling pyo3-build-config v0.26.0
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling unic-char-range v0.9.0
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling unic-common v0.9.0
[INFO] [stderr]    Compiling rustpython-parser-vendored v0.4.0
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]    Compiling unic-ucd-version v0.9.0
[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling anyhow v1.0.102
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]    Compiling pyo3-ffi v0.26.0
[INFO] [stderr]    Compiling pyo3-macros-backend v0.26.0
[INFO] [stderr]    Compiling pyo3 v0.26.0
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]    Compiling num-bigint v0.4.6
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]     Checking compression-core v0.4.31
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking compression-codecs v0.4.37
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]     Checking chrono v0.4.44
[INFO] [stderr]    Compiling numpy v0.26.0
[INFO] [stderr]    Compiling unic-emoji-char v0.9.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling unic-ucd-ident v0.9.0
[INFO] [stderr]    Compiling lalrpop-util v0.20.2
[INFO] [stderr]     Checking serde_json v1.0.150
[INFO] [stderr]     Checking toml_datetime v0.7.5+spec-1.1.0
[INFO] [stderr]     Checking nalgebra v0.33.2
[INFO] [stderr]     Checking serde_spanned v1.1.1
[INFO] [stderr]     Checking protein-translate v0.2.0
[INFO] [stderr]     Checking toml v0.9.12+spec-1.1.0
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling unicode_names2_generator v1.3.0
[INFO] [stderr]    Compiling is-macro v0.3.7
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling unicode_names2 v1.3.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling tokio-macros v2.6.1
[INFO] [stderr]    Compiling futures-macro v0.3.32
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking tokio v1.50.0
[INFO] [stderr]     Checking futures-util v0.3.32
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]    Compiling rustpython-parser-core v0.4.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]    Compiling rustpython-parser v0.4.0
[INFO] [stderr]    Compiling rustpython-ast v0.4.0
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling clap_derive v4.6.0
[INFO] [stderr]    Compiling pyo3-macros v0.26.0
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking futures-executor v0.3.32
[INFO] [stderr]     Checking futures v0.3.32
[INFO] [stderr]     Checking clap v4.6.0
[INFO] [stderr]     Checking async-compression v0.4.41
[INFO] [stderr]     Checking quick-xml v0.38.4
[INFO] [stderr]     Checking pythonize v0.26.0
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]     Checking bio v2.3.0
[INFO] [stderr]    Compiling pyo3-stub-gen-derive v0.17.2
[INFO] [stderr]     Checking pyo3-stub-gen v0.17.2
[INFO] [stderr]     Checking microBioRust v0.1.4
[INFO] [stderr]     Checking microBioRust-seqmetrics v0.1.3
[INFO] [stderr]     Checking microbiorust-py v0.1.6 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 57s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "f17791be54268657b1955fcf574250c74505e36cec4e61b9bcf72c83af481cf6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f17791be54268657b1955fcf574250c74505e36cec4e61b9bcf72c83af481cf6", kill_on_drop: false }`
[INFO] [stdout] f17791be54268657b1955fcf574250c74505e36cec4e61b9bcf72c83af481cf6
